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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9457664_9459304_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9457664 - 9459304
Intron Length:
1641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGGAGC
5'SS Class:
major
3'SS Sequence:
TCCCCCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CGTTCCTTACGG
Flanking Amino Acid:
MLFGLKCKNCKLKCHNKCTK
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.7
43.2
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
72.7
0.51
0.7
69.8
24.2
Minor 5ss
33.3
-1.9
3.4
42.5
38.9
Minor BPS
52.1
-0
2.1
59.57
47.9

Associated Gene:

Gene:
KSR2
Ensembl Gene ID:
ENSAPLG00000004721
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004858
9434084 - 9461790
27707