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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9482041_9482787_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9482041 - 9482787
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTCTTCTTAATG
Flanking Amino Acid:
VTAPPSYPPTSYSSTQPSSY
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
70.5
0.51
1.3
67.31
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005917
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006218
9475647 - 9485358
9712