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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9483680_9485267_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9483680 - 9485267
Intron Length:
1588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATATGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AACTTTTTAACA
Flanking Amino Acid:
GGRGGGRGGMGLQSESLVYT
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76
0.59
1
69.3
41.3
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
69.9
0.62
1.2
70.12
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005917
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006218
9475647 - 9485358
9712