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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9497269_9498620_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9497269 - 9498620
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTGGAGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTGCCTGGAGT
Flanking Amino Acid:
NSSKLRVNKLILQLCIGNHD
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
73.3
37.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
58
0.18
1.1
55.1
40.1
Minor 5ss
34.6
-1.7
2.8
39.6
39.8
Minor BPS
49.9
0.07
2
71.51
45.7

Associated Gene:

Gene:
NF2
Ensembl Gene ID:
ENSAPLG00000006504
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006834
9487080 - 9515859
28780
ENSAPLT00000035755
9487080 - 9515859
28780