About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9508837_9515593_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9508837 - 9515593
Intron Length:
6757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGGAG
5'SS Class:
major
3'SS Sequence:
TGCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTCAC
U12 Branch Point Sequence:
AAGGAGTCACCC
Flanking Amino Acid:
GNSKHNTIKKLTLQSTKSRV
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
56.6
42.5
Major BPS
49.7
-0
1.3
55.1
42.1
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
40.2
-1.1
3.5
54.5
49.7
Minor BPS
33.7
-1.2
2.2
38.85
39.6

Associated Gene:

Gene:
NF2
Ensembl Gene ID:
ENSAPLG00000006504
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006834
9487080 - 9515859
28780