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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9510667_9515593_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
9510667 - 9515593
Intron Length:
4927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTCTGC
5'SS Class:
major
3'SS Sequence:
TGCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTCAC
U12 Branch Point Sequence:
AAGGAGTCACCC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
57.1
43.1
Major BPS
49.7
-0
1.3
55.1
42.1
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
43.2
-0.7
3.1
59.9
44.7
Minor BPS
33.7
-1.2
2.2
38.85
39.6

Associated Gene:

Gene:
NF2
Ensembl Gene ID:
ENSAPLG00000006504
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035755
9487080 - 9515859
28780