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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9532084_9535243_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9532084 - 9535243
Intron Length:
3160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TCTCTCTCAAAC
Flanking Amino Acid:
DLEKLSAQVQGEQRLKELRQ
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
69.9
0.45
0.9
66
33.6
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
54.4
0.12
1.7
65.16
40.1

Associated Gene:

Gene:
ZMAT5
Ensembl Gene ID:
ENSAPLG00000007232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007498
9529951 - 9536258
6308