Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9535325_9535511_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9535325 - 9535511

Intron Length:

187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

GCTCTTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

GTGGCTCTCACG

Flanking Amino Acid:

KKPCRKFLQTGQCDFGANCR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

23.3

Major BPS

72.7

0.56

30.1

Major PPT

78.3

0.64

0.9

72.2

37.8

Minor 5ss

37.4

-1.4

2.9

50.4

Minor BPS

42.8

-0.7

2.1

48.1

45.5

Associated Gene:

Gene:

ZMAT5

Ensembl Gene ID:

ENSAPLG00000007232

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007498

9529951 - 9536258

6308