Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9548947_9550590_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9548947 - 9550590

Intron Length:

1644

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGGGAC

5'SS Class:

major

3'SS Sequence:

ATTTATTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTCTTTTAATT

Flanking Amino Acid:

SLEKLDRTMRRQPKPDPTPL

Intron Amino Acid Position:

570

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

65.2

34.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.7

0.82

0.8

80.6

36.1

Minor 5ss

30.2

-2.3

3.5

39.6

46.7

Minor BPS

0.74

1.1

80.3

36.2

Associated Gene:

Gene:

ASCC2

Ensembl Gene ID:

ENSAPLG00000007242

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018138

9541570 - 9565959

24390

ENSAPLT00000007577

9541570 - 9565959

24390