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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9552724_9553549_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9552724 - 9553549
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGGTG
5'SS Class:
major
3'SS Sequence:
TTGTTTCATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GAGTTTTTCACT
Flanking Amino Acid:
QVCLQPILESSCENIQPFIE
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
62.3
42.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.1
0.72
0.9
78
35.5
Minor 5ss
39
-1.2
3.6
55.1
49.2
Minor BPS
54.1
0.21
1.7
68.94
42.3

Associated Gene:

Gene:
ASCC2
Ensembl Gene ID:
ENSAPLG00000007242
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007577
9541570 - 9565959
24390