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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9553658_9554231_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9553658 - 9554231
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAATG
5'SS Class:
major
3'SS Sequence:
ACTCTCTCTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TGTTCTTTACTC
Flanking Amino Acid:
AIKKRHYEDNSVFADLWRRI
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
73.9
36.4
Major BPS
74
0.6
1
65.6
41.1
Major PPT
68.3
0.41
1
68.2
31.6
Minor 5ss
31
-2.2
3.1
39.4
46.1
Minor BPS
66.8
0.51
1.6
74.58
36.6

Associated Gene:

Gene:
ASCC2
Ensembl Gene ID:
ENSAPLG00000007242
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007577
9541570 - 9565959
24390