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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_955535_981614_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
955535 - 981614
Intron Length:
26080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TGTCTCATAACA
Flanking Amino Acid:
DLVGIVPLAMDTEILNTAIL
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
77.9
0.63
1
72.2
42.7
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
63.4
0.42
1.6
74.69
36

Associated Gene:

Gene:
TMEM132C
Ensembl Gene ID:
ENSAPLG00000011520
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012003
853775 - 1011790
158016