Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9564115_9565212_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9564115 - 9565212

Intron Length:

1098

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGACGGGG

5'SS Class:

weak_major

3'SS Sequence:

TTGCCGTGGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACGCAT

U12 Branch Point Sequence:

TTGCCGTGGACA

Flanking Amino Acid:

SAVPAARGRTEEVSTMPALP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.8

0.23

1.2

46.1

44.1

Major BPS

49.9

-0

1.3

37.5

Major PPT

60.8

0.24

1.1

56.6

43.4

Minor 5ss

29.2

-2.4

3.5

37.6

47.2

Minor BPS

47.6

-0.1

2.2

64.71

41.6

Associated Gene:

Gene:

ASCC2

Ensembl Gene ID:

ENSAPLG00000007242

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018138

9541570 - 9565959

24390

ENSAPLT00000007577

9541570 - 9565959

24390