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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9605285_9608126_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9605285 - 9608126
Intron Length:
2842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TAACGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTTAACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
76.8
34.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.2
0.52
1
65.9
40.3
Minor 5ss
47.6
-0.2
2.8
61.3
44.6
Minor BPS
75.7
0.67
1.2
74.22
38.7

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041011
9584160 - 9653411
69252
ENSAPLT00000030420
9584160 - 9653411
69252
ENSAPLT00000026072
9584160 - 9653411
69252