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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9615041_9619253_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9615041 - 9619253
Intron Length:
4213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTAATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATCTTTTTAATT
Flanking Amino Acid:
GCPNDACETSVPLQLIESVE
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.7
0.85
0.8
82.6
32.6
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
73.5
0.82
1.1
81.14
35.2

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027093
9575410 - 9653411
78002