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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9619337_9621665_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9619337 - 9621665
Intron Length:
2329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TGACAATTAACA
Flanking Amino Acid:
HLTCKDCKVIRCQFSTFEQC
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
75.5
0.57
1
72.5
37.6
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
52.9
0.09
1.8
65.69
39.3

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026072
9584160 - 9653411
69252
ENSAPLT00000008234
9605204 - 9651903
46700
ENSAPLT00000041011
9584160 - 9653411
69252
ENSAPLT00000030420
9584160 - 9653411
69252
ENSAPLT00000027093
9575410 - 9653411
78002