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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9621833_9625240_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9621833 - 9625240
Intron Length:
3408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCACCTTTATT
Flanking Amino Acid:
KEQHGDLCRPGEHVTSRFKN
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.6
39.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.5
0.55
1
66.8
43.3
Minor 5ss
31
-2.2
3.3
40.9
45.3
Minor BPS
65.6
0.57
1.7
80.75
41.1

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026072
9584160 - 9653411
69252
ENSAPLT00000008234
9605204 - 9651903
46700
ENSAPLT00000041011
9584160 - 9653411
69252
ENSAPLT00000030420
9584160 - 9653411
69252
ENSAPLT00000027093
9575410 - 9653411
78002