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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9625338_9627323_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9625338 - 9627323
Intron Length:
1986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
ATCTCCTGCATT
Flanking Amino Acid:
WRISNINEKYKLCGSYPQEI
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
78.7
0.65
0.8
72.5
31.6
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
55.3
0.25
1.9
75
42.1

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026072
9584160 - 9653411
69252
ENSAPLT00000008234
9605204 - 9651903
46700
ENSAPLT00000041011
9584160 - 9653411
69252
ENSAPLT00000030420
9584160 - 9653411
69252
ENSAPLT00000027093
9575410 - 9653411
78002