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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9633436_9633646_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9633436 - 9633646
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCATAT
U12 Branch Point Sequence:
GTTCCCTTCAGT
Flanking Amino Acid:
NGGDLSDVEFDSSISNASGA
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
59
0.23
1.2
55
42.7
Major PPT
86.6
0.82
0.7
80.5
31.5
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
57.1
0.3
2.1
78.23
43.7

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030420
9584160 - 9653411
69252
ENSAPLT00000027093
9575410 - 9653411
78002
ENSAPLT00000026072
9584160 - 9653411
69252
ENSAPLT00000008234
9605204 - 9651903
46700
ENSAPLT00000041011
9584160 - 9653411
69252