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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9638797_9640149_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9638797 - 9640149
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTTGT
5'SS Class:
major
3'SS Sequence:
TTGGTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTATTTGTATT
Flanking Amino Acid:
CSFEFNEAFLVKLVQHTYSC
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
69.6
37.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
79.7
0.67
0.9
73.8
36.9
Minor 5ss
39
-1.2
3
55.1
43.5
Minor BPS
46.5
-0.1
1.7
65.52
39.6

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027093
9575410 - 9653411
78002
ENSAPLT00000026072
9584160 - 9653411
69252
ENSAPLT00000008234
9605204 - 9651903
46700
ENSAPLT00000041011
9584160 - 9653411
69252
ENSAPLT00000030420
9584160 - 9653411
69252