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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9640321_9642463_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9640321 - 9642463
Intron Length:
2143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTATC
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AGTTTCTGAACG
Flanking Amino Acid:
NLLYSSQSESVLYPVCHVRN
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
71.2
38.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.1
0.81
0.7
84.7
23
Minor 5ss
49.3
-0
2.5
72.8
36.5
Minor BPS
65.2
0.34
1.5
67.48
39.7

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027093
9575410 - 9653411
78002
ENSAPLT00000026072
9584160 - 9653411
69252
ENSAPLT00000008234
9605204 - 9651903
46700
ENSAPLT00000041011
9584160 - 9653411
69252
ENSAPLT00000030420
9584160 - 9653411
69252