About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9642610_9643312_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9642610 - 9643312
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TGTACTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTACTTTTATA
Flanking Amino Acid:
GSSPEDQPLGRLPKTRSFDN
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.1
38.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.4
0.64
0.9
72.8
37.4
Minor 5ss
36
-1.6
3.2
47
48.3
Minor BPS
58
0.24
1.6
68.5
37.6

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027093
9575410 - 9653411
78002
ENSAPLT00000026072
9584160 - 9653411
69252
ENSAPLT00000008234
9605204 - 9651903
46700
ENSAPLT00000041011
9584160 - 9653411
69252
ENSAPLT00000030420
9584160 - 9653411
69252