About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9644718_9647120_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9644718 - 9647120
Intron Length:
2403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAG
U12 Branch Point Sequence:
TGTTTGCCAACA
Flanking Amino Acid:
RLNGDYGDEVTSIPDSESNL
Intron Amino Acid Position:
1037

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
60.8
0.27
1.6
71.4
45.1
Major PPT
72.1
0.5
1
66.7
39.5
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
44.8
-0.4
2.4
64.86
41.3

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027093
9575410 - 9653411
78002
ENSAPLT00000008234
9605204 - 9651903
46700
ENSAPLT00000041011
9584160 - 9653411
69252
ENSAPLT00000030420
9584160 - 9653411
69252