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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9644718_9647744_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9644718 - 9647744
Intron Length:
3027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
CGCTCCCTGATA
Flanking Amino Acid:
RLNGDYGDEVVTRWLPDHLA
Intron Amino Acid Position:
1076

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
83.3
0.75
0.7
76.2
32.4
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
51.4
0.04
1.7
59.52
40.6

Associated Gene:

Gene:
MTMR3
Ensembl Gene ID:
ENSAPLG00000007836
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026072
9584160 - 9653411
69252