Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9660243_9665392_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9660243 - 9665392

Intron Length:

5150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCCT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAATAT

U12 Branch Point Sequence:

TATGCTGTAATT

Flanking Amino Acid:

VIAVFFSTVQKKIELASSTA

Intron Amino Acid Position:

444

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

71.4

40.3

Major BPS

59.7

0.24

1.1

55.7

39.9

Major PPT

89.8

0.89

0.7

84.7

30.1

Minor 5ss

35.1

-1.7

3.1

48.4

47.3

Minor BPS

55.2

0.24

2.1

76.34

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008507

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008853

9656119 - 9673172

17054

ENSAPLT00000044636

9657321 - 9675856

18536

ENSAPLT00000022945

9659326 - 9675856

16531

ENSAPLT00000019284

9656119 - 9675856

19738