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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9665501_9665902_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9665501 - 9665902
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTGCTCTTACAC
Flanking Amino Acid:
GLPVIVRDTLVLSIWEGTTN
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
69.2
0.48
1
61
37.1
Major PPT
70.8
0.47
0.9
63
38.3
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
52.6
0.06
1.7
64.53
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008507
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022945
9659326 - 9675856
16531
ENSAPLT00000019284
9656119 - 9675856
19738
ENSAPLT00000008853
9656119 - 9673172
17054
ENSAPLT00000044636
9657321 - 9675856
18536