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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9666839_9668206_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9666839 - 9668206
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCACATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCACAT
U12 Branch Point Sequence:
TTCTCCACATGC
Flanking Amino Acid:
LHMQTIARMEVQTRGAFLLL
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
65.1
0.38
1.1
71.2
35.2
Major PPT
73
0.52
0.9
66.7
33.4
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
43.4
-0.5
2.2
59.37
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008507
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022945
9659326 - 9675856
16531
ENSAPLT00000019284
9656119 - 9675856
19738
ENSAPLT00000008853
9656119 - 9673172
17054
ENSAPLT00000044636
9657321 - 9675856
18536