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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9668662_9669194_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9668662 - 9669194
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAGG
5'SS Class:
major
3'SS Sequence:
TCTGTGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CTTACATTGATT
Flanking Amino Acid:
LWLDGAEAELISAEGRGVAS
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
67.1
43.8
Major BPS
76.2
0.65
1
67
39.8
Major PPT
76.4
0.59
1
72.6
42.4
Minor 5ss
41.4
-1
2.5
47.9
43
Minor BPS
59.7
0.39
1.7
77
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008507
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019284
9656119 - 9675856
19738
ENSAPLT00000008853
9656119 - 9673172
17054
ENSAPLT00000044636
9657321 - 9675856
18536
ENSAPLT00000022945
9659326 - 9675856
16531