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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9669590_9670449_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9669590 - 9670449
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTGTA
5'SS Class:
major
3'SS Sequence:
TCCTTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATAAA
U12 Branch Point Sequence:
GCTCCCATAAAG
Flanking Amino Acid:
MTERRGGSDVANGTETVARK
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.6
39.1
Major BPS
53.7
0.09
1.1
55.9
35.8
Major PPT
85.5
0.8
0.7
80.6
24.7
Minor 5ss
34.8
-1.7
3.4
40
46
Minor BPS
49.6
-0.1
1.8
56.4
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008507
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008853
9656119 - 9673172
17054
ENSAPLT00000044636
9657321 - 9675856
18536
ENSAPLT00000022945
9659326 - 9675856
16531
ENSAPLT00000019284
9656119 - 9675856
19738