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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9670568_9671541_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9670568 - 9671541
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCAAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACCTTTTTAATT
Flanking Amino Acid:
MTDGAAKVIESLGMPASLKN
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.4
37.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
64.5
0.33
1
59.5
34.5
Minor 5ss
30.8
-2.2
3.8
47.7
48
Minor BPS
67.3
0.62
1.2
72.81
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008507
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044636
9657321 - 9675856
18536
ENSAPLT00000022945
9659326 - 9675856
16531
ENSAPLT00000019284
9656119 - 9675856
19738
ENSAPLT00000008853
9656119 - 9673172
17054