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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9671642_9672279_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9671642 - 9672279
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGGG
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACAAAA
U12 Branch Point Sequence:
TGCCACAAAACC
Flanking Amino Acid:
EAYERRYSNWSRVHQAVKLY
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
67.1
44.6
Major BPS
49.2
-0
0.9
54.9
27
Major PPT
82.7
0.74
0.7
76.7
31.9
Minor 5ss
37.6
-1.4
3.2
49.7
46.6
Minor BPS
43.6
-0.5
2
54.79
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008507
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019284
9656119 - 9675856
19738
ENSAPLT00000008853
9656119 - 9673172
17054
ENSAPLT00000044636
9657321 - 9675856
18536
ENSAPLT00000022945
9659326 - 9675856
16531