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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9672513_9675556_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9672513 - 9675556
Intron Length:
3044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGACGT
5'SS Class:
major
3'SS Sequence:
TGTTGCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAA
U12 Branch Point Sequence:
TGTTGCTTCACA
Flanking Amino Acid:
SYLKAHLPPKVLEEVSQDLE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
59
45.6
Major BPS
55
0.12
1.2
57.8
37.4
Major PPT
78.7
0.64
0.9
72.3
37.9
Minor 5ss
35.2
-1.7
3.1
48.9
46.7
Minor BPS
59.4
0.29
2.2
75.93
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008507
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044636
9657321 - 9675856
18536
ENSAPLT00000022945
9659326 - 9675856
16531
ENSAPLT00000019284
9656119 - 9675856
19738