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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9688964_9689565_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9688964 - 9689565
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAG
U12 Branch Point Sequence:
TTCTCTGTCAGC
Flanking Amino Acid:
LTMKLFYYNEVTPSDYQPPG
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
49.4
-0
1.7
60.7
45.9
Major PPT
74.8
0.56
0.7
69.2
24.5
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
43.8
-0.5
2.5
60.93
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008772
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009122
9686090 - 9700960
14871