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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9689820_9690658_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9689820 - 9690658
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGAAA
5'SS Class:
major
3'SS Sequence:
ATTTGCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ACGCTATTAAGA
Flanking Amino Acid:
DEEEEEGSTEDNPLPVRADS
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.9
35.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.1
0.63
0.9
71
39
Minor 5ss
37
-1.5
3.2
47.6
48.1
Minor BPS
45.8
-0.3
1.8
51.63
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008772
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009122
9686090 - 9700960
14871