Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9719126_9722803_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9719126 - 9722803

Intron Length:

3678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAAA

5'SS Class:

strong_major

3'SS Sequence:

CCCCCTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAA

U12 Branch Point Sequence:

TCGCCTCTATCC

Flanking Amino Acid:

MKFIPAGVVPFVALLL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

79.3

28.7

Major BPS

54.6

0.12

1.1

46.7

38.9

Major PPT

70.4

0.46

0.7

63.6

24.7

Minor 5ss

32.1

-2

39.7

45.8

Minor BPS

46.2

-0.3

1.9

56.05

42.6

Associated Gene:

Gene:

LIF

Ensembl Gene ID:

ENSAPLG00000017145

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033073

9718371 - 9724817

6447