About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9736560_9737476_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9736560 - 9737476
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CGTTGTTTATTT
Flanking Amino Acid:
PAGKQKLQYEGIFIKDSNSL
Intron Amino Acid Position:
706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
83.2
30.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86
0.81
0.6
84.8
22.9
Minor 5ss
32.5
-2
3.1
41.3
45.3
Minor BPS
49
0
2
67.71
44.1

Associated Gene:

Gene:
SF3A1
Ensembl Gene ID:
ENSAPLG00000009057
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009468
9735797 - 9747273
11477