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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9737549_9737748_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9737549 - 9737748
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGCTCTTTAATT
Flanking Amino Acid:
LVFTLPLSDQVSVIKVKIHE
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
74.4
0.55
0.8
70.1
35.8
Minor 5ss
36.7
-1.5
2.6
45.3
42.8
Minor BPS
73.4
0.81
1.2
78.72
38

Associated Gene:

Gene:
SF3A1
Ensembl Gene ID:
ENSAPLG00000009057
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009468
9735797 - 9747273
11477