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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9737851_9738666_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9737851 - 9738666
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTG
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
GAGACTTTATCT
Flanking Amino Acid:
PEEEFLRRNKGPVTVKVQVP
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
70.7
39.5
Major BPS
75.1
0.62
1
65.6
41
Major PPT
87
0.83
0.7
81.4
30.6
Minor 5ss
42.5
-0.8
3.1
57.9
46.8
Minor BPS
53.9
0.2
1.7
66.67
43.8

Associated Gene:

Gene:
SF3A1
Ensembl Gene ID:
ENSAPLG00000009057
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009468
9735797 - 9747273
11477