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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9739771_9740470_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9739771 - 9740470
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAC
U12 Branch Point Sequence:
TCTGCTAAGAAA
Flanking Amino Acid:
PITSVPRPPTMPPPVRAAVV
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
58.2
0.2
1
49.5
35.1
Major PPT
85
0.79
0.7
77
31.7
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
40.8
-0.7
2
51.53
40.6

Associated Gene:

Gene:
SF3A1
Ensembl Gene ID:
ENSAPLG00000009057
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009468
9735797 - 9747273
11477