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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9740714_9740869_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9740714 - 9740869
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTGG
5'SS Class:
major
3'SS Sequence:
TTTATCCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATCC
Flanking Amino Acid:
EEEIQKPEEKVTWDGHSGSM
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
54.6
45
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.2
0.64
1
77.8
36.5
Minor 5ss
34.1
-1.8
3.6
46.4
49
Minor BPS
56.8
0.19
1.6
67.21
38.5

Associated Gene:

Gene:
SF3A1
Ensembl Gene ID:
ENSAPLG00000009057
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009468
9735797 - 9747273
11477