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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9741557_9741674_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9741557 - 9741674
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATG
Flanking Amino Acid:
VIVRKDYDPKASKPLPPAPA
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
66
45.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
33
-1.9
2.9
41.4
45
Minor BPS
72.1
0.55
1.2
71.21
36.3

Associated Gene:

Gene:
SF3A1
Ensembl Gene ID:
ENSAPLG00000009057
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009468
9735797 - 9747273
11477