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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9741793_9742437_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9741793 - 9742437
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ACTACTGGAACT
Flanking Amino Acid:
QDTQVQDMDEGSDDEDESQK
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
75.1
0.62
1
65.6
41
Major PPT
85.4
0.8
0.9
91.3
20.9
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
47.3
-0.1
2.1
67.71
43.1

Associated Gene:

Gene:
SF3A1
Ensembl Gene ID:
ENSAPLG00000009057
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009468
9735797 - 9747273
11477