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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9742632_9743058_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9742632 - 9743058
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAGG
5'SS Class:
major
3'SS Sequence:
TTCTGCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
CTTTGAGCAACC
Flanking Amino Acid:
ETVDFQPNEQGNFPPPTTPE
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
81.6
0.71
0.8
77
31.7
Minor 5ss
30.7
-2.2
3.3
40.3
45.4
Minor BPS
40.7
-0.7
2.6
59.43
45.5

Associated Gene:

Gene:
SF3A1
Ensembl Gene ID:
ENSAPLG00000009057
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009468
9735797 - 9747273
11477