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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9744667_9745483_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9744667 - 9745483
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTCTGCTCCACA
Flanking Amino Acid:
QTAQQQLPQKVQAQVIQETV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
85.2
32.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.2
0.63
0.8
72.3
32.5
Minor 5ss
42.3
-0.9
3.5
64.1
47.4
Minor BPS
47.7
-0.1
2.4
67.11
45.4

Associated Gene:

Gene:
SF3A1
Ensembl Gene ID:
ENSAPLG00000009057
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009468
9735797 - 9747273
11477