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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9750925_9751614_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9750925 - 9751614
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CCCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
GCCCCCTTCACC
Flanking Amino Acid:
LYRDTWVRYLGYANEVGESF
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
66.9
0.38
0.7
57.1
27.1
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
54.8
0.13
1.8
60.42
44.7

Associated Gene:

Gene:
MTFP1
Ensembl Gene ID:
ENSAPLG00000024514
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023750
9750858 - 9752336
1479