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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9752070_9752260_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9752070 - 9752260
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TATCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
ACCCTATTATCC
Flanking Amino Acid:
AIPVIITPIDRSVDFLMDSS
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
76
0.59
0.9
69.7
36.3
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
45.1
-0.3
1.8
50.67
40.1

Associated Gene:

Gene:
MTFP1
Ensembl Gene ID:
ENSAPLG00000024514
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023750
9750858 - 9752336
1479