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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9829714_9834546_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9829714 - 9834546
Intron Length:
4833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTGAA
5'SS Class:
major
3'SS Sequence:
CCTCCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTTTCTCCATC
Flanking Amino Acid:
VCGRQLPGSADDSGDEEPAS
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
71.5
33.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
81.9
0.72
0.7
75.9
26
Minor 5ss
28.5
-2.5
2.9
29.8
36.9
Minor BPS
50
-0
2
65.51
41

Associated Gene:

Gene:
OSBP2
Ensembl Gene ID:
ENSAPLG00000015471
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016145
9783621 - 9853793
70173