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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9845610_9845912_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9845610 - 9845912
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCTTTTTCACCT
Flanking Amino Acid:
ITVTADPKHHRRSGSNLSGA
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
67.4
39.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
30.6
-2.2
3.5
42.6
44.4
Minor BPS
48.9
-0
1.8
66.64
44.9

Associated Gene:

Gene:
OSBP2
Ensembl Gene ID:
ENSAPLG00000015471
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025461
9783621 - 9853923
70303
ENSAPLT00000016145
9783621 - 9853793
70173