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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9849394_9850859_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9849394 - 9850859
Intron Length:
1466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
GGCACCTCACGG
Flanking Amino Acid:
EFGFRSLCEQVSHHPPAAAH
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
39.3
-0.9
2
37.78
44.3

Associated Gene:

Gene:
OSBP2
Ensembl Gene ID:
ENSAPLG00000015471
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025461
9783621 - 9853923
70303
ENSAPLT00000016145
9783621 - 9853793
70173