About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9871090_9882929_F

Intron Information:

Intron Rank:
144478
Intron Class:
major
Intron Phase:
Intron Coordinates:
9871090 - 9882929
Intron Length:
11840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAGCT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
68.6
36.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
26.2
-2.7
3.5
38.7
46.6
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027855
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037984
9870870 - 9884528
13659